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ATCC
sim a9 mouse microglial cell line Sim A9 Mouse Microglial Cell Line, supplied by ATCC, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more https://www.bioz.com/result/sim a9 mouse microglial cell line/product/ATCC Average 96 stars, based on 1 article reviews
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BIO-CAT Inc
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Applied Biological Materials Inc
immortalized mouse microglia cell line sim-a9 ![]() Immortalized Mouse Microglia Cell Line Sim A9, supplied by Applied Biological Materials Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more https://www.bioz.com/result/immortalized mouse microglia cell line sim-a9/product/Applied Biological Materials Inc Average 90 stars, based on 1 article reviews
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FUJIFILM
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Absolute Biotech Inc
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Pain Therapeutics
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Image Search Results
Journal: Nutrients
Article Title: Fatty Acid-Derived N -acylethanolamines Dietary Supplementation Attenuates Neuroinflammation and Cognitive Impairment in LPS Murine Model
doi: 10.3390/nu14183879
Figure Lengend Snippet: Effects of LPS and DS treatment on microglial morphology, proinflammatory cytokines, and NO production. ( a ) Representative images of SIM-A9 microglia cell culture after LPS (1 μg/mL) and DS (0.1, 1 and 10 μg/mL) treatment, scale bar—100 μm. ( b ) Western blot analysis of SIM-A9 microglia cell lysates ( a ) INFγ (25 kDa), TNFα (26 kDa), IL-1β (30 kDa), IL6 (22 kDa), and MHCII (47 kDa) were detected in LPS-activated SIM-A9 cell lysates with β-tubulin protein expression used as a loading control. Original uncropped images of blots are shown in . ( c ) Relative quantity of INFγ, TNFα, IL-1β, IL6, and MHCII in SIM-A9 microglia cell lysates determined with Western blot, n = 4, * p < 0.001—compared to Veh, + p < 0.001—compared to LPS. ( d ) Nitrite production was detected with the Griess test, n = 6 per group. Data are presented as mean ± SEM, +++ p < 0.001 — compared to LPS, *** p < 0.001 — compared to Veh.
Article Snippet: For in vitro studies, we used a
Techniques: Cell Culture, Western Blot, Expressing
Journal: Nature Communications
Article Title: SKA2 regulated hyperactive secretory autophagy drives neuroinflammation-induced neurodegeneration
doi: 10.1038/s41467-024-46953-x
Figure Lengend Snippet: A SNAP29, SNAP23, STX3, SEC22B, and FKBP5 co-immunoprecipitation (SKA2 IP) and whole cell extract (WCE) in hippocampus (HIP), prefrontal cortex (PFC) and amygdala (AMY) samples of mice ( n = 8). B HIS pull down assay (replicated in 3 independent in vitro experiments). DDK(Flag)-tagged SNAP23, SNAP29, Syntaxin3 or Syntaxin4 was incubated with purified magnetic beads-HIS-tagged SKA2 or magnetic beads-HIS protein alone. After incubation, bead bound proteins were eluted at room temperature (RT) or at 95 °C and subjected to western blot analysis using antibodies against HIS and FLAG. Input lane contains HIS alone (left) or HIS-tagged SKA2 (right). C – M SIM-A9 cells transfected with SKA2, FKBP5 or their respective controls, were harvested 24 h later. After immunoprecipitation (IP) of protein complexes, input and co-IP proteins were quantified by western blotting. C , F , I , K Representative blots of ( D , E , G , H , J , L , M ). Graphs display quantification of SNAP29/SEC22B, STX3/SEC22B, SKA2/SNAP29, FKBP5/SEC22B protein association after SEC22B or SNAP29 IP (unpaired two tailed t-test: ( D ) t 6 = 8.945, p < 0.0001, ( E ) t 6 = 12.94, p < 0.0001, ( G ) t 6 = 6.056, p = 0.0009, ( H ) t 6 = 5.554, p = 0.0014; one-way ANOVA: ( J ) F 2, 9 = 17.28, p = 0.0008, Tukey’s post hoc test: ctrl vs. FKBP5-OE, p = 0.0743, ctrl vs. FKBP5-KO, p = 0.0218, FKBP5-OE vs. FKBP5-KO, p = 0.0006; unpaired two tailed t-test: ( L ) t 6 = 10.27, p < 0.0001, ( M ) t 6 = 8.140, p = 0.0002; n = mean derived from four independent in vitro experiments). * = p < 0.05; ** = p < 0.01; *** = p < 0.001; **** = p < 0.0001. Data are presented as mean + SEM. Source data are provided as a file.
Article Snippet: The
Techniques: Immunoprecipitation, Pull Down Assay, In Vitro, Incubation, Purification, Magnetic Beads, Western Blot, Transfection, Co-Immunoprecipitation Assay, Two Tailed Test, Derivative Assay
Journal: Nature Communications
Article Title: SKA2 regulated hyperactive secretory autophagy drives neuroinflammation-induced neurodegeneration
doi: 10.1038/s41467-024-46953-x
Figure Lengend Snippet: A , B IL-1β release measured via ELISA from supernatants of SIM-A9 cells 24 h after manipulation of SKA2 and/or FKBP5 expression, and following overnight LPS (100 ng/mL) and treatment with LLOMe (0.25 mM) for 3 h (unpaired two tailed t-test: (A) t 4 = 11.99, p = 0.0003; one-way ANOVA: B F 3, 8 = 158.6, p < 0.0001; Tukey’s post hoc test: ctrl vs. SKA2-OE, p = 0.0384, ctrl vs. FKBP5-OE, p < 0.0001, SKA2-OE vs. FKBP5-OE, p < 0.0001, FKBP5-OE vs. SKA2 + FKBP5 OE, p < 0.0001; n = mean derived from three independent in vitro experiments). C Schematic overview of the SA pathway with SKA2 and FKBP5. The cargo receptor TRIM16, together with SEC22B, transfers molecular cargo (e.g., IL-1β) to the autophagy-related LC3B-positive membrane carriers. SEC22B, now acting as an R-SNARE on the delimiting membrane facing the cytosol, carries out fusion at the plasma membrane in conjunction with the Q bc -SNAREs, SNAP23 and SNAP29 (SNAP23/29), and one of the plasma membrane Q a -SNAREs, STX3 or STX4 (STX3/4), thus delivering IL-1β to the extracellular milieu, where it exerts its biological functions. FKBP5 acts as a positive regulator of SA by enhancing TRIM16-SEC22B complex formation as well as autophagosome-plasma membrane fusion via the SNARE-protein complex assembly. In contrast, SKA2 inhibits the SNARE-protein complex formation during vesicle-plasma membrane fusion, thereby acting as gatekeeper of SA. D , E Schematic overview of in vivo microdialysis and the experimental design and timeline; each sample was collected over 30 min indicated by the light gray lines. Quantifications of IL-1β, determined by capillary-based immunoblotting from in vivo medioprefrontal cortex microdialysis of C57Bl/6NCrl mice injected intraperitoneally with ULK1 inhibitor (ULK1i, an autophagy inhibitor) or saline ( F ; repeated measures two-way ANOVA, time × treatment interaction: F 5, 30 = 7.064, p = 0.0002; Šidák’s multiple comparisons post hoc test, post-FS-1: p = 0.0084; n = 4 mice per group) as well as of wild type (WT) and global Fkbp5 knockout mice ( G ; repeated measures two-way ANOVA, time × genotype interaction: F 5, 30 = 34.15, p < 0.0001; Šidák’s multiple comparisons post hoc test: FS: p = 0.009, post-FS-1: p = 0.0163, post-FS-2: p = 0.0294; n = 4 mice per group). FS foot shock. * = p < 0.05; ** = p < 0.01; *** = p < 0.001; **** = p < 0.0001. Data are presented as mean + SEM. Source data are provided as a file.
Article Snippet: The
Techniques: Enzyme-linked Immunosorbent Assay, Expressing, Two Tailed Test, Derivative Assay, In Vitro, Membrane, In Vivo, Western Blot, Injection, Saline, Knock-Out
Journal: Nature Communications
Article Title: SKA2 regulated hyperactive secretory autophagy drives neuroinflammation-induced neurodegeneration
doi: 10.1038/s41467-024-46953-x
Figure Lengend Snippet: A SIM-A9 Sec22b −/− cells expressing ASC (apoptosis-associated speck-like protein containing a CARD) -mCerulean (via epifluorescence) show a significantly decreased number of intracellular (white arrows) ASC specks compared to wild type (WT) SIM-A9 cells (unpaired two tailed t-test: t 4 = 3.206, p = 0.0327; n = mean derived from three independent in vitro experiments). B In WT SIM-A9 cells knockdown of Ska2 or LPS treatment leads to a significantly increased number of intracellular ASC specks compared to Scr-shRNA or LPS-treated cells (2-way ANOVA: main LPS treatment effect ($), F 1,31 = 10.60, p = 0.0027, main Ska2 knockdown effect (*), F 1,31 = 5.482, p = 0.0258; n = 9 WT Veh SCR-shRNA, n = 9 WT Veh SKA2-shRNA, n = 9 WT LPS SCR-shRNA, n = 8 WT LPS SKA2-shRNA). C In contrast, knockdown of Ska2 or LPS treatment does not have any effects on the number of ASC specks in SIM-A9 Sec22b −/− cells (2-way ANOVA: n. s. treatment effect F 1,29 = 0.312, p = 0.5804, main Ska2 knockdown effect, F 1,29 = 0.055, p = 0.8157; n = 9 for SEC22B KO Veh SCR-shRNA and SKA2-shRNA, n = 7 SEC22B KO LPS SCR-shRNA, n = 8 SEC22B KO LPS SKA2-shRNA). D , E Knockdown of Ska2 leads to significantly increased SEC22B binding to SNAP29 (unpaired two tailed t-test: t 4 = 4.113, p = 0.0063; n = 4 independent biological replicates) as well as NEK7 binding to NLRP3 in protein lysates of organotypic hippocampal slice cultures (unpaired two tailed t-test: t 4 = 2.998, p = 0.0241; n = 4 independent biological replicates). F IHC images of ASC (green) and DAPI (blue) 2 weeks after viral injection (Scr-shRNA-AAV and Ska2-shRNA-1-AAV) into the hippocampus. Quantification of ASC+ cells (left) and ASC specks (right) 2 weeks after viral injection (paired t-test: ASC+ cells, t 2 = 6.414, p = 0.0235, ASC specks, t 2 = 6.937, p = 0.0202; n = 3 mice). G IHC images of ASC (green) and DAPI (blue) 4 weeks after viral injection (Scr-shRNA-AAV and Ska2-shRNA-1-AAV) into the hippocampus. Quantification of ASC+ cells (left) and ASC specks (right) 4 weeks after viral injection (paired t-test: ASC+ cells, t 2 = 8.511, p = 0.0135; ASC specks, t 2 = 10.99, p = 0.0082; n = 3 mice). H IHC images of CASPASE-1 (CASP-1) (green) and mCherry (red, viral marker) 2 weeks after viral injection (Scr-shRNA-AAV and Ska2-shRNA-1-AAV) into the hippocampus (left). (right) Quantification of CASP-1 expression 2 weeks after viral injection (paired t-test: t 3 = 2.842, p = 0.0655, n = 4 mice). I IHC images of CASP-1 (green) and mCherry (red, viral marker) 4 weeks after viral injection (Scr-shRNA-AAV and Ska2-shRNA-1-AAV) into the hippocampus (left). (right) Quantification of CASP-1 expression 4 weeks after viral injection (paired t-test: t 3 = 3.367, p = 0.0435, n = 4 mice). J Full length Gasdermin D (GSDMD FL) levels as well as the ratio of the cleaved N-terminal form of GSDMD (GSDMD N-term) to GSDMD FL are increased 2 weeks after Ska2 knockdown (unpaired two tailed t-test; GSDMD FL/ β-actin: t 18 = 4.105, p = 0.0007, GSDMD N-term/GSDMD FL: t 18 = 9.259, p < 0.0001; n = 10 independent biological replicates per group). K Examples blots of ( E ). L Schematic overview of the interaction between secretory autophagy (SA) and the GSDMD-mediated IL-1β release. SKA2 depletion results in increased SA-dependent IL-1β release, serving as a molecular vicious feed-forward loop for inflammasome activation. Inflammasome assembly activates CASP-1 enzymatic function. ASC in the inflammasome complex recruits CASP-1. Activation of CASP-1 cleaves GSDMD to release the N-terminal domain, which forms pores in the plasma membrane for uncontrolled IL-1β release. * = p < 0.05; ** = p < 0.01; *** = p < 0.001, **** = p < 0.0001. Data are presented as mean + SEM. Scale bar represents 5 µm in A, 50 µm in ( F , G ) (left), 10 µm in ( B , F , G ) (right), and 250 µm in ( H , I ). Source data are provided as a file.
Article Snippet: The
Techniques: Expressing, Two Tailed Test, Derivative Assay, In Vitro, shRNA, Binding Assay, Injection, Marker, Activation Assay, Membrane
Journal: PLoS ONE
Article Title: Characterization of the SIM-A9 cell line as a model of activated microglia in the context of neuropathic pain
doi: 10.1371/journal.pone.0231597
Figure Lengend Snippet: ICC study to detect the expression of microglia-specific markers (Iba1, A ) and proteins involved in the signaling pathway initiating pain hypersensitivity (P2X4R, B ; and BDNF, C ) in SIM-A9 cell line. SIM-A9 cells (Passage no. 9; P9) were cultured in a 96-well plate in complete growth media for 48 h. The cells were fixed with 4% PFA followed by immunostaining for Iba1, P2X4R, and BDNF. The cells were captured under phase contrast setting (Transmitted) and nuclei were counterstained using Hoechst 33342. The signals for P2X4R were imaged under the green fluorescence channel (excitation 470/22 nm and emission 510/42 nm) whereas Iba1 and BDNF were imaged under red fluorescence channel (excitation 531/40 and emission 593/40). Similar observations were noted in triplicate wells/group in three independent experiments. Scale bar = 100 μm. All images were cropped at the same scale using Adobe Photoshop CC 19.1.9 for clarity and conciseness of the presentation. Full-length images of a representative set ( B ) is presented in .
Article Snippet: We propose that this ATP-activated
Techniques: Expressing, Cell Culture, Immunostaining, Fluorescence
Journal: PLoS ONE
Article Title: Characterization of the SIM-A9 cell line as a model of activated microglia in the context of neuropathic pain
doi: 10.1371/journal.pone.0231597
Figure Lengend Snippet: Western blot of P2X4R and Iba1 proteins ( A ), and α-tubulin, BDNF and its isoforms in SIM-A9 cell lysates ( B ) collected from different passages. In each blot, the series of bands on the left shows the protein ladder. For P2X4R and Iba1 ( A ), cell lysates collected from P4 and P5, at 30, 40, and 50μg/lane total protein were used to detect P2X4R (green, 43kD) and Iba1 (green, 17kD) on the 800 nm channel. The signals at about 25 kD are due to the non-specific reactivity of secondary antibody. For α-tubulin and BDNF ( B ), cell lysates at 30 and 40 μg/lane total protein were electrophoresed to identify α-tubulin (50 kD), BDNF monomer (14 kD), BDNF dimer (28 kD), and pro-BDNF (37 kD) on the 700 nm and 800 nm channels, respectively. The blots were scanned using an Odyssey imager at intensity setting 5 and processed using ImageStudio 5.2 software. Each sample was run in triplicates ( A ) or duplicates ( B ). C-F . Densitometry analysis of P2X4R, Iba1, BDNF, and BDNF dimer bands was performed using ImageStudio 5.2 software. Signal intensities of P2X4R ( C ) and Iba1 ( D ) bands were normalized for protein loading. Signal intensities of BDNF ( E ) and BDNF dimers ( F ) were first normalized to α-tubulin and then to the amount of protein loaded. Statistical analysis between P4 and P5 was performed by unpaired t-test and Welch’s correction using GraphPad Prism 8.1.2. Asterisks indicate statistically significant differences (* p<0.05). Blots were merged and cropped for the clarity and conciseness of the presentation. Full-length blots are presented in , raw blots A and B .
Article Snippet: We propose that this ATP-activated
Techniques: Western Blot, Software
Journal: PLoS ONE
Article Title: Characterization of the SIM-A9 cell line as a model of activated microglia in the context of neuropathic pain
doi: 10.1371/journal.pone.0231597
Figure Lengend Snippet: The detection of Iba1, P2X4R, and BDNF expression (green fluorescence, 800 nm channel) and cell nucleus (red fluorescence, 700 nm channel) in 96-well plates using In-cell western (ICW). SIM-A9 cells in 96-well plates were fixed with 4% PFA and were treated using a Li-COR Odyssey blocking solution. Each protein was analyzed in two columns. For each group (nuclear staining, target protein staining, and overlay), the cells in the left columns were immunostained with Iba1, P2X4R, or BDNF primary and secondary antibodies (+/+), whereas the primary antibodies were omitted in the right columns (-/+). All wells were incubated with AF790 secondary antibodies (1:700 dilution) and DRAQ5 (nucleus stain, 1:3000) prior to scanning using a Li-COR Odyssey near-infrared imaging system at intensity setting 5 and plate height 4.0 mm. Three independent experiments were performed with n = 3 wells per group. ICW images of 96-well plates for each protein were merged and cropped for the clarity and conciseness of the presentation. Full-length scans are presented in .
Article Snippet: We propose that this ATP-activated
Techniques: Expressing, Fluorescence, In-Cell ELISA, Blocking Assay, Staining, Incubation, Imaging
Journal: PLoS ONE
Article Title: Characterization of the SIM-A9 cell line as a model of activated microglia in the context of neuropathic pain
doi: 10.1371/journal.pone.0231597
Figure Lengend Snippet: Effect of LPS ( B, C, and D) and ATP ( E , F , and G ) exposure on the cell viability of SIM-A9 microglia cells (P5 and P6) immediately ( B and E ), 24 h post-treatment ( C and F ), and 48 h post-treatment ( D and G ) using ATP assay. The experimental scheme is shown in A . SIM-A9 cells were cultured in a 96-well-plate at 16,500 cells/well for 48 h. Cells were exposed to 2.5 ng/mL to 50 μg/mL LPS for 2, 4 or 24 h. Cells were treated with 25 nM to 250 μM ATP for 2, 4 or 24 h. The cell viability was evaluated using an ATP assay either immediately, 24 or 48 h post-LPS or ATP treatment. The cell viability of treated cells was calculated relative to control, untreated cells. PEI at 20 μg/mL was used as a positive control. Statistical analysis was performed using GraphPad Prism 8.1.2. Asterisks indicate significant differences (**** p<0.0001, *** p<0.001, ** p<0.005, * p<0.05) compared to the control. The data is representative of two independent experiments and is presented as mean ± standard deviation (SD) of at least n = 4 wells per group.
Article Snippet: We propose that this ATP-activated
Techniques: ATP Assay, Cell Culture, Positive Control, Standard Deviation
Journal: PLoS ONE
Article Title: Characterization of the SIM-A9 cell line as a model of activated microglia in the context of neuropathic pain
doi: 10.1371/journal.pone.0231597
Figure Lengend Snippet: A ) SIM-A9 cells (P6) were cultured for 48 h and exposed to 1, 50, and 100 μM ATP for 2, 4, 6 and 24 h, then lysed immediately after the treatment for subsequent analysis. B ) For P2X4R and BDNF evaluation, cell lysates were loaded at 50 μg in each lane, and the loading amount for Iba1 and α-tubulin was 30 μg/lane. Human recombinant BDNF protein (14 kD) was loaded at 0.4 μg/lane as a positive control. ATP concentration and time-dependent modulation of the levels of α-tubulin (50 kD, red), P2X4R (43 kD), BDNF (14 kD), BDNF dimer (28 kD) and Iba1 (17 kD) was studied after scanning the blots at 700 nm and 800 nm channels using Odyssey imager at intensity setting 5. C - F . Densitometry analysis of P2X4R, Iba1, BDNF, and BDNF dimer bands was performed using ImageStudio 5.2 software. Normalized signal intensity in Y-axis represents a normalization of protein signal intensity to, first, α-tubulin signal intensity followed by normalization to the signal intensity of control/untreated cells at each time point. Note: C-F demonstrates the quantification of the western blot shown in . It should be noted that the experiment was performed three independent times and the densitometry analysis for representative proteins, BDNF and Iba1, are shown in . Statistical analysis between specified groups was performed using GraphPad Prism 8.1.2. Asterisks indicate statistically significant differences (** p<0.005, * p<0.05). Blots were merged and cropped for the clarity and conciseness of the presentation. Full-length blots are presented in .
Article Snippet: We propose that this ATP-activated
Techniques: Cell Culture, Recombinant, Positive Control, Concentration Assay, Software, Western Blot
Journal: PLoS ONE
Article Title: Characterization of the SIM-A9 cell line as a model of activated microglia in the context of neuropathic pain
doi: 10.1371/journal.pone.0231597
Figure Lengend Snippet: A ) SIM-A9 microglia cells (P8) were cultured for 48 h and exposed to 50 μM ATP for 2 and 4 h. Cells were fixed with 4% PFA, then treated with blocking solution and Iba1 protein was stained using rabbit Iba1 (1:500) and anti-rabbit AF790 (1:700, green). C ) BDNF was stained using rabbit BDNF (1:500) and anti-rabbit AF790 (1:700, green). Nucleus was stained with DRAQ5 (red). Non-specific binding of secondary antibodies was accounted for by omitting primary antibodies in each group. B and D ) Densitometry analysis of each plate (Iba1 and BDNF) was performed using ImageStudio 5.2 software. Normalized signal intensity in Y-axis represents the normalization of protein signal intensity to nuclear staining followed by subtraction of non-specific signal intensity (-/+, no 1°, only 2° Ab). Statistical analysis between specified groups was performed using GraphPad Prism 8.1.2. Asterisks represent statistically significant differences (* p<0.05). Data are presented as mean ± SD of n = 3 samples. ICW images of 96-well plates for each protein were merged and cropped for the clarity and conciseness of the presentation. Full-length blots are presented in .
Article Snippet: We propose that this ATP-activated
Techniques: Cell Culture, Blocking Assay, Staining, Binding Assay, Software
Journal: PLoS ONE
Article Title: Characterization of the SIM-A9 cell line as a model of activated microglia in the context of neuropathic pain
doi: 10.1371/journal.pone.0231597
Figure Lengend Snippet: SIM-A9 cells (P8) were cultured for 48 h and incubated with 50 μM ATP for 2 h. Control, untreated cells, and treated cells were fixed with 4% PFA, blocked to prevent non-specific antibody binding, and immunostained with mouse-P2X4R (1:250), rabbit-Iba1 (1:500), and BDNF (1:500) primary antibodies, respectively. P2X4R was counterstained with anti-mouse AF555 (green), Iba1 and BDNF with anti-rabbit AF488 (red), and the nucleus was stained with Hoechst 33342 dye (blue). Images were captured under the phase-contrast setting (Transmitted), DAPI (blue), green or red channels, and merged in the overlay image. Triplicate samples were analyzed in two independent experiments. Scale bar = 100 μm. All images were cropped at the same scale using Adobe Photoshop CC 19.1.9 for clarity and conciseness of the presentation. The full length of a representative phase-contrast image for P2X4R is presented in .
Article Snippet: We propose that this ATP-activated
Techniques: Cell Culture, Incubation, Binding Assay, Staining